基本信息
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Bio
My graduate work in bioinformatics aimed to develop a framework that identifies tissue-specific enhancers by integrating multi-modal genomic (gene expression, methylation and interaction) data. As a postdoctoral fellow in Carnegie Mellon University, I obtained training in data mining methods for image analysis. Previously, at the MD Anderson Cancer Center, I developed methods to analyze the relationship between image-derived phenotypic attributes and genotypic attributes for cancer patients, focusing most of the work on datasets from the Cancer Genome Atlas (TCGA). Such image data is obtained from multiple modalities including, HandE whole slide data, immunohistochemistry, high-content microscopy, and radiology. At the University of Michigan, the primary focus of our group is to develop algorithms to quantify tumor phenotypes (from radiology, histopathology and microscopy data) and to relate those phenotypic aspects with genetic alterations like expression changes, mutation or copy number alterations. Further, we also develop methodologies (using statistical methods and machine learning) to integrate these diverse modalities (imaging, genomics etc.) to develop decision algorithms for prognosis and treatment selection. Looking forward, we are interested to develop analysis methodologies (based on spatial statistics, image analysis and machine learning) as well as tools for "spatial cancer systems biology" by leveraging spatial transcriptomics, spatial proteomics and multiplex imaging strategies of the tumr microenvironment to obtain a deeper characterization of regulatory networks underlying oncogenesis.
Research Interests
Papers共 459 篇Author StatisticsCo-AuthorSimilar Experts
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Joel Eliason, Santhoshi Krishnan, Yasunari Fukuda,Matias A Bustos, Dan Winkowski, Sungnam Cho, Akshay Basi, Regan Baird, Elizabeth A Grimm,Michael A Davies,Dave S B Hoon,Arvind Rao,Jared K Burks,Suhendan Ekmekcioglu
Frontiers in immunology (2025): 1560778-1560778
medRxiv the preprint server for health sciences (2025)
Zhi Duan, Mingchen Shi,Anbarasu Kumaraswamy, Dong Lin, Dhruv Khokhani, Yong Wang, Chao Zhang,Diana Flores, Eva Rodansky, Olivia A Swaim, William K Storck, Hannah N Beck, Radhika A Patel,Erolcan Sayar, Brian P Hanratty,Hui Xue, Xin Dong, Zoe R Maylin, Rensheng Wan,David A Quigley,Martin Sjöström,Ya-Mei Hu,Faming Zhao,Zheng Xia, Siyuan Cheng,Xiuping Yu,Felix Y Feng,Li Zhang,Rahul Aggarwal, Eric J Small,Visweswaran Ravikumar,Arvind Rao,Karan Bedi,John K Lee,Colm Morrissey,Ilsa Coleman,Peter S Nelson,Eva Corey, Aaron M Udager, Ryan J Rebernick,Marcin P Cieslik,Arul M Chinnaiyan,Joel A Yates,Michael C Haffner,Yuzhuo Wang, Joshi J Alumkal
The Journal of clinical investigationno. 11 (2025)
arxiv(2025)
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arxiv(2024)
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Nature Reviews Methods Primersno. 1 (2024)
Eileen S. Carpenter,Padma Kadiyala,Ahmed M. Elhossiny,Samantha B. Kemp,Jay Li,Nina G. Steele,Rémy Nicolle,Zeribe C. Nwosu,Julia Freeman,Henry Dai,Daniel Paglia,Wenting Du,Katelyn Donahue,Jacqueline Morales,Paola I. Medina-Cabrera,Monica E. Bonilla,Lindsey Harris,Stephanie The,Valerie Gunchick,Nicole Peterson,Kristee Brown,Michael Mattea,Carlos E. Espinoza,Jake McGue,Sarah M. Kabala,Rachel K. Baliira,Nur M. Renollet, Ann Mooney, Jianhua Liu,Sean Bhalla,Jeremy P. Farida,Christopher Ko,Jorge D. Machicado,Richard S. Kwon,Erik–Jan Wamsteker,Allison R. Schulman,Michelle A. Anderson,Ryan Law,Anoop Prabhu,Pierre A. Coulombe,Arvind Rao,Timothy L. Frankel,Filip Bednar,Jiaqi Shi,Vaibhav Sahai,Marina Pasca di Magliano
openalex
Eileen S. Carpenter,Padma Kadiyala,Ahmed M. Elhossiny,Samantha B. Kemp,Jay Li,Nina G. Steele,Rémy Nicolle,Zeribe C. Nwosu,Julia Freeman,Henry Dai,Daniel Paglia,Wenting Du,Katelyn Donahue,Jacqueline Morales,Paola I. Medina-Cabrera,Monica E. Bonilla,Lindsey Harris,Stephanie The,Valerie Gunchick,Nicole Peterson,Kristee Brown,Michael Mattea,Carlos E. Espinoza,Jake McGue,Sarah M. Kabala,Rachel K. Baliira,Nur M. Renollet,Ayden G. Mooney,Jianhua Liu,Sean Bhalla,Jeremy P. Farida,Christopher Ko,Jorge D. Machicado,Richard S. Kwon,Erik-Jan Wamsteker,Allison Schulman,Michelle A. Anderson,Ryan Law,Anoop Prabhu,Pierre A. Coulombe,Arvind Rao,Timothy L. Frankel,Filip Bednar,Jiaqi Shi,Vaibhav Sahai,Marina Pasca Di Magliano
crossref(2024)
Eileen S. Carpenter,Padma Kadiyala,Ahmed M. Elhossiny,Samantha B. Kemp,Jay Li,Nina G. Steele,Rémy Nicolle,Zeribe C. Nwosu,Julia Freeman,Henry Dai,Daniel Paglia,Wenting Du,Katelyn Donahue,Jacqueline Morales,Paola I. Medina-Cabrera,Monica E. Bonilla,Lindsey Harris,Stephanie The,Valerie Gunchick,Nicole Peterson,Kristee Brown,Michael Mattea,Carlos E. Espinoza,Jake McGue,Sarah M. Kabala,Rachel K. Baliira,Nur M. Renollet,Ayden G. Mooney,Jianhua Liu,Sean Bhalla,Jeremy P. Farida,Christopher Ko,Jorge D. Machicado,Richard S. Kwon,Erik-Jan Wamsteker,Allison Schulman,Michelle A. Anderson,Ryan Law,Anoop Prabhu,Pierre A. Coulombe,Arvind Rao,Timothy L. Frankel,Filip Bednar,Jiaqi Shi,Vaibhav Sahai,Marina Pasca Di Magliano
crossref(2024)
Eileen S. Carpenter,Padma Kadiyala,Ahmed M. Elhossiny,Samantha B. Kemp,Jay Li,Nina G. Steele,Rémy Nicolle,Zeribe C. Nwosu,Julia Freeman,Henry Dai,Daniel Paglia,Wenting Du,Katelyn Donahue,Jacqueline Morales,Paola I. Medina-Cabrera,Monica E. Bonilla,Lindsey Harris,Stephanie The,Valerie Gunchick,Nicole Peterson,Kristee Brown,Michael Mattea,Carlos E. Espinoza,Jake McGue,Sarah M. Kabala,Rachel K. Baliira,Nur M. Renollet,Ayden G. Mooney,Jianhua Liu,Sean Bhalla,Jeremy P. Farida,Christopher Ko,Jorge D. Machicado,Richard S. Kwon,Erik-Jan Wamsteker,Allison Schulman,Michelle A. Anderson,Ryan Law,Anoop Prabhu,Pierre A. Coulombe,Arvind Rao,Timothy L. Frankel,Filip Bednar,Jiaqi Shi,Vaibhav Sahai,Marina Pasca Di Magliano
crossref(2024)
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Author Statistics
#Papers: 460
#Citation: 25387
H-Index: 47
G-Index: 158
Sociability: 8
Diversity: 3
Activity: 198
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