Sergey Koren

基本信息

Career Trajectory

Bio

During his three years at JCVI, he contributed to the development of the Celera Assembler, which has been used to assemble both the Drosophila melanogaster and human genomes. In parallel, Dr. Koren worked under the supervision Dr. Mihai Pop at the University of Maryland, College Park, where he developed several tools for metagenome assembly and analysis. In 2010, Dr. Koren joined the National Biodefense Analysis and Countermeasures Center (NBACC) where he led genome assembly development and pioneered the use of single-molecule sequencing for the reconstruction of complete genomes

Research Interests

Papers共 170 篇Author StatisticsCo-AuthorSimilar Experts

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Verkko2: Integrating Proximity Ligation Data with Long-Read De Bruijn Graphs for Efficient Telomere-to-telomere Genome Assembly, Phasing, and Scaffolding

Dmitry Antipov,Mikko Rautiainen,Sergey Nurk,Brian P Walenz, Steven J Solar,Adam M Phillippy,Sergey Koren

Genome research (2025)

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Complete Sequencing of Ape Genomes

DongAhn Yoo,Arang Rhie, Prajna Hebbar,Francesca Antonacci,Glennis A Logsdon, Steven J Solar,Dmitry Antipov, Brandon D Pickett,Yana Safonova,Francesco Montinaro, Yanting Luo,Joanna Malukiewicz,Jessica M Storer, Jiadong Lin, Abigail N Sequeira,Riley J Mangan,Glenn Hickey, Graciela Monfort Anez, Parithi Balachandran,Anton Bankevich,Christine R Beck,Arjun Biddanda, Matthew Borchers,Gerard G Bouffard, Emry Brannan, Shelise Y Brooks,Lucia Carbone,Laura Carrel,Agnes P Chan, Juyun Crawford,Mark Diekhans, Eric Engelbrecht,Cedric Feschotte, Giulio Formenti, Gage H Garcia,Luciana de Gennaro, David Gilbert,Richard E Green,Andrea Guarracino, Ishaan Gupta,Diana Haddad, Junmin Han,Robert S Harris,Gabrielle A Hartley,William T Harvey,Michael Hiller,Kendra Hoekzema,Marlys L Houck,Hyeonsoo Jeong,Kaivan Kamali,Manolis Kellis,Bryce Kille,Chul Lee, Youngho Lee,William Lees,Alexandra P Lewis, Qiuhui Li,Mark Loftus,Yong Hwee Eddie Loh, Hailey Loucks,Jian Ma,Yafei Mao, Juan F I Martinez, Patrick Masterson, Rajiv C McCoy,Barbara McGrath, Sean McKinney,Britta S Meyer,Karen H Miga, Saswat K Mohanty, Katherine M Munson, Karol Pal,Matt Pennell, Pavel A Pevzner, David Porubsky,Tamara Potapova, Francisca R Ringeling,Joana L Rocha, Oliver A Ryder,Samuel Sacco, Swati Saha,Takayo Sasaki,Michael C Schatz, Nicholas J Schork, Cole Shanks,Linnéa Smeds, Dongmin R Son,Cynthia Steiner, Alexander P Sweeten,Michael G Tassia,Françoise Thibaud-Nissen, Edmundo Torres-González,Mihir Trivedi, Wenjie Wei, Julie Wertz, Muyu Yang, Panpan Zhang,Shilong Zhang,Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu, Erich D Jarvis,Jennifer L Gerton, Iker Rivas-González,Benedict Paten,Zachary A Szpiech, Christian D Huber,Tobias L Lenz,Miriam K Konkel, Soojin V Yi,Stefan Canzar, Corey T Watson, Peter H Sudmant,Erin Molloy,Erik Garrison, Craig B Lowe,Mario Ventura,Rachel J O'Neill,Sergey Koren,Kateryna D Makova, Adam M Phillippy, Evan E Eichler

Natureno. 8062 (2025): 401-418

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Improved Sequence Mapping Using a Complete Reference Genome and Lift-over

Nae-Chyun Chen,Luis F. Paulin,Fritz J. Sedlazeck,Sergey Koren,Adam M. Phillippy,Ben Langmead

NATURE METHODSno. 1 (2024): 41-+

Cited4Views0WOSNATUREBibtex

Graph-based Variant Discovery Reveals Novel Dynamics in the Human Microbiome

Harihara Subrahmaniam Muralidharan,Jacquelyn S Michaelis,Jay Ghurye,Todd Treangen,Sergey Koren,Marcus Fedarko,Mihai Pop

arXiv (Cornell University) (2024)

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Phased Nanopore Assembly with Shasta and Modular Graph Phasing with GFAse

GENOME RESEARCHno. 3 (2024): 454-468

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The Formation and Propagation of Human Robertsonian Chromosomes

Leonardo Gomes de Lima,Andrea Guarracino,Sergey Koren,Tamara Potapova,Sean McKinney,Arang Rhie, Steven J Solar,Chris Seidel, Brandon Fagen,Brian P Walenz,Gerard G Bouffard,Shelise Y Brooks,Michael Peterson,Kate Hall, Juyun Crawford,Alice C Young,Brandon D Pickett,Erik Garrison,Adam M Phillippy,Jennifer L Gerton

bioRxiv the preprint server for biology (2024)

Cited0Views0WOSBibtex

Complete Sequencing of Ape Genomes

DongAhn Yoo,Arang Rhie, Prajna Hebbar,Francesca Antonacci,Glennis A Logsdon, Steven J Solar,Dmitry Antipov,Brandon D Pickett,Yana Safonova,Francesco Montinaro, Yanting Luo,Joanna Malukiewicz,Jessica M Storer,Jiadong Lin, Abigail N Sequeira,Riley J Mangan,Glenn Hickey, Graciela Monfort Anez,Parithi Balachandran,Anton Bankevich,Christine R Beck,Arjun Biddanda,Matthew Borchers,Gerard G Bouffard, Emry Brannan,Shelise Y Brooks,Lucia Carbone,Laura Carrel,Agnes P Chan, Juyun Crawford,Mark Diekhans,Eric Engelbrecht,Cedric Feschotte,Giulio Formenti,Gage H Garcia,Luciana de Gennaro,David Gilbert,Richard E Green,Andrea Guarracino, Ishaan Gupta,Diana Haddad, Junmin Han,Robert S Harris,Gabrielle A Hartley,William T Harvey,Michael Hiller,Kendra Hoekzema,Marlys L Houck,Hyeonsoo Jeong,Kaivan Kamali,Manolis Kellis,Bryce Kille,Chul Lee,Youngho Lee,William Lees,Alexandra P Lewis, Qiuhui Li,Mark Loftus,Yong Hwee Eddie Loh,Hailey Loucks,Jian Ma,Yafei Mao, Juan F I Martinez,Patrick Masterson,Rajiv C McCoy,Barbara McGrath,Sean McKinney,Britta S Meyer,Karen H Miga, Saswat K Mohanty,Katherine M Munson, Karol Pal,Matt Pennell,Pavel A Pevzner,David Porubsky,Tamara Potapova, Francisca R Ringeling, Joana L Roha,Oliver A Ryder,Samuel Sacco,Swati Saha,Takayo Sasaki,Michael C Schatz,Nicholas J Schork, Cole Shanks,Linnéa Smeds, Dongmin R Son,Cynthia Steiner, Alexander P Sweeten,Michael G Tassia,Françoise Thibaud-Nissen,Edmundo Torres-González,Mihir Trivedi, Wenjie Wei, Julie Wertz,Muyu Yang, Panpan Zhang,Shilong Zhang,Yang Zhang, Zhenmiao Zhang, Sarah A Zhao, Yixin Zhu,Erich D Jarvis,Jennifer L Gerton,Iker Rivas-González,Benedict Paten,Zachary A Szpiech,Christian D Huber,Tobias L Lenz,Miriam K Konkel,Soojin V Yi,Stefan Canzar,Corey T Watson,Peter H Sudmant,Erin Molloy,Erik Garrison,Craig B Lowe,Mario Ventura,Rachel J O'Neill,Sergey Koren,Kateryna D Makova,Adam M Phillippy,Evan E Eichler

bioRxiv the preprint server for biology (2024)

Cited3Views0WOSBibtex

Telomere-to-telomere Assemblies of Cattle and Sheep Y-chromosomes Uncover Divergent Structure and Gene Content

Temitayo A. Olagunju,Benjamin D. Rosen,Holly L. Neibergs,Gabrielle M. Becker,Kimberly M. Davenport,Christine G. Elsik,Tracy S. Hadfield,Sergey Koren,Kristen L. Kuhn,Arang Rhie,Katie A. Shira,Amy L. Skibiel,Morgan R. Stegemiller,Jacob W. Thorne,Patricia Villamediana,Noelle E. Cockett,Brenda M. Murdoch,Timothy P. L. Smith

NATURE COMMUNICATIONSno. 1 (2024)

Cited1Views0WOSNATUREBibtex

MetaCompass: Reference-guided Assembly of Metagenomes

Tu Luan, Victoria Cepeda,Bo Liu,Zac Bowen,Ujjwal Ayyangar,Mathieu Almeida,Christopher M Hill,Sergey Koren,Todd J Treangen,Adam Porter,Mihai Pop

arXiv (Cornell University)（2024）

Cited17Views0WOSBibtex

RT2T: A Global Collaborative Project to Study Chromosomal Evolution in the Suborder Ruminantia

Ted Kalbfleisch,Stephanie McKay,Brenda Murdoch,David L. Adelson, Diego Almansa,Gabrielle Becker,Linda M. Beckett,María José Benítez-Galeano,Fernando Biase,Theresa Casey, Edward Chuong,Emily Clark,Shannon Clarke,Noelle Cockett,Christine Couldrey,Brian W. Davis,Christine G. Elsik,Thomas Faraut,Yahui Gao,Carine Genet,Patrick Grady,Jonathan Green, Richard Green,Dailu Guan,Darren Hagen,Gabrielle A. Hartley, Mike Heaton,Savannah J. Hoyt,Wen Huang,Erich Jarvis, Jenna Kalleberg,Hasan Khatib, Klaus-Peter Koepfi,James Koltes,Sergey Koren,Christa Kuehn,Tosso Leeb,Alexander Leonard,George E. Liu,Wai Yee Low,Hunter McConnell,Kathryn McRae,Karen Miga,Michelle Mousel,Holly Neibergs,Rachel O'Neill, Temitayo Olagunju,Matt Pennell,Bruna Petry,Mirjam Pewsner,Adam M. Phillippy,Brandon D. Pickett, Paulene Pineda,Tamara Potapova,Satyanarayana Rachagani,Arang Rhie,Monique Rijnkels,Annie Robic,Nelida Rodriguez Osorio,Yana Safonova, Gustavo Schettini,Robert D. Schnabel,Nagabhishek Sirpu Natesh,Morgan Stegemiller,Jessica Storer,Paul Stothard, Caleb Stull,Gwenola Tosser-Klopp,Germán M. Traglia, Chris Tuggle,Curtis P. Van Tassell, Corey Watson,Rosemarie Weikard,Klaus Wimmers,Shangqian Xie, Liu Yang, Tim Smith, Ben Rosen

openalex（2024）

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Papers共 170 篇Author StatisticsCo-AuthorSimilar Experts