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Comprehensive Genomic Analysis and Expression Profiling of the BTB and TAZ (BT) Genes in Cucumber (cucumis Sativus L.)

Czech Journal of Genetics and Plant Breeding(2020)SCI 4区

Jiangxi Agr Univ

Cited 12|Views7
Abstract
BTB-TAZ ( BT) proteins are plant-specific transcription factors containing a BTB domain and a TAZ domain. They play vital roles in various biological processes and stress responses. In this study, a total of three BT genes (CsBT1-3) were identified from cucumber genome, and they were unevenly distributed in two of the seven chromosomes. Phylogenetic analysis of the BT proteins from cucumber, Arabidopsis, apple, tomato, and rice revealed that these proteins could be distinctly divided into two groups in accordance with their motif distributions. We also determined the structures of BT genes from cucumber, Arabidopsis, and rice to demonstrate their differences. The quantitative real-time PCR (qRT-PCR) results showed that the CsBT genes displayed differential expression patterns in cucumber tissues, and their expression was regulated by cold, salt, and drought stresses. These findings suggest that CsBT genes may participate in cucumber development and responses to various abiotic stresses.
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Key words
abiotic stress,BTB domain,CaMBD domain,gene expression,TAZ domain
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要点】:本文通过全面基因组分析和表达谱研究,揭示了黄瓜中BTB和TAZ(BT)基因在植物生长和应对非生物胁迫中的作用,发现了黄瓜中CsBT基因家族的三个新基因及其表达调控机制。

方法】:研究采用生物信息学方法对黄瓜基因组进行BT基因识别,并通过系统发育分析比较了不同物种间BT蛋白的进化关系和结构差异,利用定量实时荧光定量PCR(qRT-PCR)技术分析了CsBT基因在不同黄瓜组织中的表达模式及其对冷、盐、旱胁迫的响应。

实验】:实验在黄瓜基因组中识别出三个BT基因(CsBT1-3),并在不同组织中通过qRT-PCR技术检测了这些基因的表达情况,发现它们在不同非生物胁迫下有不同的表达反应。数据集为黄瓜基因组序列及实验中收集的qRT-PCR数据。