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SegPC-2021: A Challenge & Dataset on Segmentation of Multiple Myeloma Plasma Cells from Microscopic Images.

Anubha Gupta,Shiv Gehlot Kwangyeol Lee, Jaehyung Ye

Medical Image Analysis(2023)CCF CSCI 1区

IIIT Delhi | Lab Oncol Unit | XLAB d o o | Rhein Westfal TH Aachen | BmDeep Co Tehran | Indian Inst Technol | Shenzhen Univ | AIVIS Inc

Cited 13|Views40
Abstract
Multiple Myeloma (MM) is an emerging ailment of global concern. Its diagnosis at the early stages is critical for recovery. Therefore, efforts are underway to produce digital pathology tools with human-level intelligence that are efficient, scalable, accessible, and cost-effective. Following the trend, a medical imaging challenge on “Segmentation of Multiple Myeloma Plasma Cells in Microscopic Images (SegPC-2021)” was organized at the IEEE International Symposium on Biomedical Imaging (ISBI), 2021, France. The challenge addressed the problem of cell segmentation in microscopic images captured from the slides prepared from the bone marrow aspirate of patients diagnosed with Multiple Myeloma. The challenge released a total of 775 images with 690 and 85 images of sizes 2040×1536 and 1920×2560 pixels, respectively, captured from two different (microscope and camera) setups. The participants had to segment the plasma cells with a separate label on each cell’s nucleus and cytoplasm. This problem comprises many challenges, including a reduced color contrast between the cytoplasm and the background, and the clustering of cells with a feeble boundary separation of individual cells. To our knowledge, the SegPC-2021 challenge dataset is the largest publicly available annotated data on plasma cell segmentation in MM so far. The challenge targets a semi-automated tool to ensure the supervision of medical experts. It was conducted for a span of five months, from November 2020 to April 2021. Initially, the data was shared with 696 people from 52 teams, of which 41 teams submitted the results of their models on the evaluation portal in the validation phase. Similarly, 20 teams qualified for the last round, of which 16 teams submitted the results in the final test phase. All the top-5 teams employed DL-based approaches, and the best mIoU obtained on the final test set of 277 microscopic images was 0.9389. All these five models have been analyzed and discussed in detail. This challenge task is a step towards the target of creating an automated MM diagnostic tool.
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Cell segmentation,Cancer imaging,Multiple Myeloma,Blood cancer,SegPC
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要点】:SegPC-2021是一个关于从显微图像中分割多发性骨髓瘤血浆细胞的挑战和数据集,旨在帮助早期诊断多发性骨髓瘤。

方法】:使用数字病理学工具对患有多发性骨髓瘤的患者骨髓抽吸制片显微图像中的血浆细胞进行分割。

实验】:在SegPC-2021挑战中,发布了总共775张图像,参与者需将血浆细胞进行分割,其中包括核和细胞质,最佳分割结果mIoU为0.9389。