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Predicting T Cell-Inflamed Gene Expression Profile in Hepatocellular Carcinoma Based on Dynamic Contrast-Enhanced Ultrasound Radiomics

JOURNAL OF HEPATOCELLULAR CARCINOMA(2023)

Sun Yat Sen Univ

Cited 3|Views12
Abstract
Purpose:The T cell-inflamed gene expression profile (GEP) quantifies 18 genes' expression indicative of a T-cell immune tumor microenvironment, playing a crucial role in the immunotherapy of hepatocellular carcinoma (HCC). Our study aims to develop a radiomics-based machine learning model using contrast-enhanced ultrasound (CEUS) for predicting T cell-inflamed GEP in HCC.Methods:The primary cohort of HCC patients with preoperative CEUS and RNA sequencing data of tumor tissues at the single center was used to construct the model. A total of 5936 radiomics features were extracted from the regions of interest in representative images of each phase, and the least absolute shrinkage and selection operator and logistic regression were used to construct four models including three phase-specific models and an integrated model. The area under the curve (AUC) was calculated to evaluate the performance of the model. The independent cohort of HCC patients with preoperative CEUS and Immunoscore based on immunohistochemistry and digital pathology was used to validate the correlation between model prediction value and T-cell infiltration.Results:There were 268 patients enrolled in the primary cohort and 46 patients enrolled in the independent cohort. Compared with the other three models, the AP model constructed by 36 arterial phase (AP) features showed good performance with a mean AUC of 0.905 in the 5-fold cross-validation and was easier to apply in the clinical setting. The decision curve and calibration curve confirmed the clinical utility of the model. In the independent cohort, patients with high Immunoscores showed significantly higher GEP prediction values than those with low Immunoscores (t=-2.359, p=0.029).Conclusion:The CEUS-based model is a reliable predictive tool for T cell-inflamed GEP in HCC, and might facilitate individualized immunotherapy decision-making.
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Key words
Radiomics,Contrast-enhanced ultrasound,Hepatocellular carcinoma,T cell-inflamed gene expression profile
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要点】:研究旨在开发基于对比增强超声(CEUS)的放射组学机器学习模型,预测肝细胞癌(HCC)中的T细胞炎症基因表达谱(GEP),为免疫治疗提供个性化决策支持。

方法】:利用单中心HCC患者术前CEUS和肿瘤组织RNA测序数据构建模型,提取5936个放射组学特征,通过最小绝对收缩和选择算子(LASSO)及逻辑回归构建四个模型。

实验】:在268名患者组成的初级队列中构建模型,并在46名患者组成的独立队列中验证模型,动脉期(AP)模型在5折交叉验证中表现出平均AUC为0.905的良好性能,且易于临床应用。独立队列中,免疫评分高的患者GEP预测值显著高于免疫评分低的患者。