In-Depth Chemical Analysis of the Brain Extracellular Space Using in Vivo Microdialysis with Liquid Chromatography-Tandem Mass Spectrometry
Journal of Molecular Liquids(2024)SCI 2区
Abstract
Metabolomic analysis of samples acquired in vivo from the brain extracellular space by microdialysis sampling can provide insights into chemical underpinnings of a given brain state and how it changes over time. Small sample volumes and low physiological concentrations have limited the identification of compounds from this compartment, so at present, we have scant knowledge of its composition. As a result, most in vivo measurements have limited depth of analysis. Here, we describe an approach to (1) identify hundreds of compounds in brain dialysate and (2) routinely detect many of these compounds in 5 mu L microdialysis samples to enable deep monitoring of brain chemistry in time-resolved studies. Dialysate samples collected over 12 h were concentrated 10-fold and then analyzed using liquid chromatography with iterative tandem mass spectrometry (LC-MS/MS). Using this approach on dialysate from the rat striatum with both reversed-phase and hydrophilic interaction liquid chromatography yielded 479 unique compound identifications. 60% of the identified compounds could be detected in 5 mu L of dialysate without further concentration using a single 20 min LC-MS analysis, showing that once identified, most compounds can be detected using small sample volumes and shorter analysis times compatible with routine in vivo monitoring. To detect more neurochemicals, LC-MS analysis of dialysate derivatized with light and isotopically labeled benzoyl chloride was employed. 872 nondegenerate benzoylated features were detected with this approach, including most small-molecule neurotransmitters and several metabolites involved in dopamine metabolism. This strategy allows deeper annotation of the brain extracellular space than previously possible and provides a launching point for defining the chemistry underlying brain states.
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论文作者介绍
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The authors of this article include Brady G. Anderson (Research Interests: P-Nitroanisole/Pyridine Actinometers, P-Nitroacetophenone, Quantum Yield, Column Packing, Omics, Institution: Biomed Res Core Facil Metabol Core, Univ Michigan), Pavlo Popov (Institution: Univ Michigan, Dept Chem, Ann Arbor, MI 48109 USA), Amanda R. Cicali (Institution: Univ Michigan, Dept Chem, Ann Arbor, MI 48109 USA), Adanna Nwamba (Institution: Univ Michigan, Dept Chem, Ann Arbor, MI 48109 USA), Evans Charles R (Research Interests: Metabolomics, Sepsis, L-Carnitine, Acetyl-Carnitine, Clinical Trial, Institution: Department of Internal Medicine, University of Michigan) and Robert T. Kennedy (Research Interests: Analytical Chemistry and its applications in Neuroscience, Endocrinology, and Biotechnology, Institution: College of Engineering, University of Michigan; Department of Pharmacology, Medical School, University of Michigan; Department of Chemistry, College of Literature, Science, and the Arts, University of Michigan).
文献大纲
Outline of the Paper
Abstract
- Introduces a method using microdialysis sampling combined with liquid chromatography-tandem mass spectrometry (LC-MS/MS) for in-depth analysis of the extracellular space of the brain
- This method can identify and monitor the chemical constituents in the extracellular space of the brain, improving the understanding of brain status
Introduction
- The extracellular space of the brain is the chemical environment for communication between neurons and glial cells
- Microdialysis sampling can obtain samples from the extracellular space of the brain, but sample volume and low concentration limit the analysis
- Liquid chromatography-tandem mass spectrometry technology can enhance the depth of analysis
Experimental Section
Chemical Reagents and Materials
- Lists the chemical reagents and materials used in the experiment
Sample Collection and Preparation
- Samples were collected from the rat striatum using microdialysis technology
- Samples were processed through concentration and derivatization
LC-MS/MS Conditions
- Describes the specific conditions for liquid chromatography and tandem mass spectrometry
Data Processing and Compound Identification
- MetIDTracker software was used for compound identification
- Compounds were identified through spectral library matching and retention time prediction
Results
- Using this method, 479 compounds were identified in non-derivatized samples
- In 5 μL samples, 60% of the identified compounds could be detected
- After BzCl derivatization, more neurotransmitters and metabolites could be detected
Discussion
- Discusses the limitations of the method and possible directions for improvement
- Proposes that this method can be used to monitor the chemical changes in the brain status
Conclusion
- This strategy can deeply annotate and monitor the chemical composition of the extracellular space of the brain
- It helps to define the chemical basis under different brain states
关键问题
Q: What specific research methods were used in the paper?
- In vivo microdialysis sampling: Collection of interstitial fluid samples from the rat striatum.
- Liquid Chromatography-Tandem Mass Spectrometry (LC-MS/MS): Separation of samples using reversed-phase and hydrophilic interaction liquid chromatography (RPLC and HILIC), combined with tandem mass spectrometry for compound identification.
- Data-dependent acquisition: Enhancement of the detection capability for low abundance compounds through iterative acquisition and rolling precursor ion exclusion.
- Chemical derivatization: Derivatization of samples with benzoyl chloride (BzCl) to increase the detection sensitivity of polar compounds.
- Database matching and retention time matching: Matching MS/MS spectra with databases and combining retention time information to improve the accuracy of compound identification.
- Retention time prediction model: Construction of a retention time prediction model using Retip software to assist in identifying compounds not present in the database.
Q: What are the main research findings and achievements?
- In-depth annotation of the interstitial fluid metabolome: Identification of 479 unique compounds using LC-MS/MS, including lipids, neurotransmitters, neuromodulators, hormones, precursors and metabolites, energy molecules, etc.
- Detection in small volume samples: 60% of the identified compounds can be detected in 5 μL of interstitial fluid by LC-MS, providing possibilities for routine monitoring.
- Derivatization enhances detection range: Detection of 872 unique benzoylated features using BzCl derivatization technology, including most small-molecule neurotransmitters.
- Rich metabolome in interstitial fluid: The study results indicate that interstitial fluid is a complex environment rich in metabolic and neurochemical information.
Q: What are the current limitations of this research?
- False positive identifications: The use of database matching and retention time matching methods still carries the possibility of false positive identifications, which require validation with standards.
- Unidentified compounds: There are many unidentified compounds in the LC-MS/MS data, which need to be further analyzed using other techniques or methods.
- Limitations of derivatization technology: The BzCl derivatization technique may not derivatize all compounds, necessitating the exploration of other derivatization methods.
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